PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000258338
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family E2F/DP
Protein Properties Length: 202aa    MW: 22691.5 Da    PI: 10.4455
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000258338genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP61.71.1e-19877171
        E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliek.....kekneirwkg 71
                   r+eksL lltq+f+kl+ +s++  +   + +++L   d+  k+RRiYDi+NVL+++nliek     ++k++++w g
  MDP0000258338  8 RREKSLALLTQNFVKLFVCSTKLLT---NFCSKL---DEAAKVRRIYDIANVLSSMNLIEKthtsdTRKPAFKWLG 77
                   689****************877655...568999...7778***********************999*******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.9E-21478IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.8E-21877IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.8E-161077IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.45E-101078IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MNPKSDNRRE KSLALLTQNF VKLFVCSTKL LTNFCSKLDE AAKVRRIYDI ANVLSSMNLI  60
EKTHTSDTRK PAFKWLGLRG KEEVPQETKK RAFGTDITNV SSKRGKVDSF IGGKLDGQKQ  120
KGLVGEADRS NLEDSKDGSK SYQFGPFAPV TIARAGTGNT RNVHDWEKLT STYRPQYQNQ  180
GPGDNSGRTR REVDRERNMT GD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.115341e-133cell culture| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393070.11e-132PREDICTED: E2F transcription factor-like E2FE isoform X2
SwissprotQ8LSZ46e-46E2FE_ARATH; E2F transcription factor-like E2FE
TrEMBLM5WBU38e-86M5WBU3_PRUPE; Uncharacterized protein
STRINGPOPTR_0015s08160.13e-59(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36683366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.17e-48DP-E2F-like 1